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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 174DNase-seq
  • 99ChIP-seq
  • 2ATAC-seq
Assay category
  • 176DNA accessibility
  • 99DNA binding
Target of assay
  • 53histone
  • 53histone modification
  • 46transcription factor
  • 32broad histone mark
  • 21narrow histone mark
  • 6RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 157June, 2019
  • 58November, 2017
  • 41August, 2017
  • 9October, 2019
  • 7November, 2018
  • 1March, 2019
  • 1November, 2020
  • 1October, 2017
Available data
  • 3149bam
  • 2947bigWig
  • 1614bed narrowPeak
  • 1574tsv
  • 1337fastq
  • 915bigBed narrowPeak
  • 280tagAlign
  • 275bed broadPeak
  • 247bigBed broadPeak
  • 238bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4tar
  • 3cool
  • 2hdf5
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 269Homo sapiens
Biosample type
  • 177tissue
  • 59cell line
  • 38primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 275AMP
Genome assembly (visualization)
  • 261hg19
  • 236GRCh38
Lab
  • 273AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • brain
BIOSAMPLE
ASSAY

275 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
kidney13
muscle of leg13
skeletal muscle tissue13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
cardiac fibroblast3
glomerular visceral epithelial cell2
kidney tubule cell2
in vitro differentiated cells
adipocyte1
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