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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 197DNase-seq
  • 113ChIP-seq
  • 2ATAC-seq
Assay category
  • 199DNA accessibility
  • 113DNA binding
Target of assay
  • 64histone
  • 64histone modification
  • 49transcription factor
  • 36broad histone mark
  • 28narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 181June, 2019
  • 70November, 2017
  • 39August, 2017
  • 9October, 2019
  • 8November, 2018
  • 4October, 2017
  • 1March, 2019
Available data
  • 2799bam
  • 2599bigWig
  • 1742bed narrowPeak
  • 1257fastq
  • 1122tsv
  • 1014bigBed narrowPeak
  • 376tagAlign
  • 312bed broadPeak
  • 276bigBed broadPeak
  • 246bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 306Homo sapiens
Biosample type
  • 210tissue
  • 59cell line
  • 43primary cell
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 312AMP
Genome assembly (visualization)
  • 289hg19
  • 273GRCh38
Lab
  • 310AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

312 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
choroid plexus epithelial cell12
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