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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 173DNase-seq
  • 101ChIP-seq
  • 2ATAC-seq
Assay category
  • 175DNA accessibility
  • 101DNA binding
Target of assay
  • 52histone
  • 52histone modification
  • 49transcription factor
  • 28broad histone mark
  • 24narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 154June, 2019
  • 70November, 2017
  • 28August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3335bam
  • 3101bigWig
  • 1757bed narrowPeak
  • 1591tsv
  • 1356fastq
  • 995bigBed narrowPeak
  • 383tagAlign
  • 276bed broadPeak
  • 252bigBed broadPeak
  • 239bed bed3+
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 270Homo sapiens
Biosample type
  • 168tissue
  • 59cell line
  • 48primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 47brain
  • musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 276AMP
Genome assembly (visualization)
  • 252hg19
  • 249GRCh38
Lab
  • 274AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
organ_slims!
  • musculature of body
BIOSAMPLE
ASSAY

276 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
kidney13
renal cortex interstitium11
renal pelvis10
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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