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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199DNase-seq
  • 102ChIP-seq
Assay category
  • 199DNA accessibility
  • 102DNA binding
Target of assay
  • 53histone
  • 53histone modification
  • 49transcription factor
  • 28broad histone mark
  • 25narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 183June, 2019
  • 70November, 2017
  • 29August, 2017
  • 8October, 2019
  • 7November, 2018
  • 3October, 2017
  • 1November, 2020
Available data
  • 2703bam
  • 2546bigWig
  • 1603bed narrowPeak
  • 1183tsv
  • 951bigBed narrowPeak
  • 887fastq
  • 379tagAlign
  • 301bed broadPeak
  • 278bigBed broadPeak
  • 244bed bed3+
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 301Homo sapiens
Biosample type
  • 193tissue
  • 58cell line
  • 49primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 301AMP
Genome assembly (visualization)
  • 280hg19
  • 268GRCh38
Lab
  • 301AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

301 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG258
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
in vitro differentiated cells
adipocyte1
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