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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
76
ChIP-seq
2
ATAC-seq
Assay category
208
DNA accessibility
76
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
narrow histone mark
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
50
November, 2017
24
August, 2017
9
November, 2018
9
October, 2019
3
October, 2017
1
March, 2019
1
November, 2020
Available data
2884
bam
2623
bigWig
1599
tsv
1283
bed narrowPeak
1159
fastq
800
bigBed narrowPeak
284
bed broadPeak
262
bigBed broadPeak
258
bed bed3+
224
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
280
Homo sapiens
Biosample type
198
tissue
49
cell line
36
primary cell
1
in vitro differentiated cells
Organ
78
kidney
53
liver
41
musculature of body
36
brain
36
limb
30
heart
18
epithelium
18
ureter
17
pancreas
13
vasculature
11
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
284
AMP
Genome assembly (visualization)
260
hg19
256
GRCh38
Lab
282
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
6
inconsistent control read length
2
inconsistent assembly
organ_slims!
spinal cord
target.investigated_as!
RNA binding protein
narrow histone mark
BIOSAMPLE
ASSAY
284 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
2
kidney
13
muscle of leg
13
+ See 43 more…
cell line
HepG2
48
Panc1
1
primary cell
skeletal muscle myoblast
1
6
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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