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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
13
DNase-seq
Assay category
58
DNA binding
13
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
8
June, 2019
3
November, 2018
2
October, 2019
Available data
790
bam
713
bigWig
548
bed narrowPeak
465
fastq
389
bigBed narrowPeak
237
tsv
92
tagAlign
71
bed broadPeak
71
bigBed broadPeak
21
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
71
Homo sapiens
Biosample type
58
cell line
10
tissue
3
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
71
AMP
Genome assembly (visualization)
71
hg19
57
GRCh38
Lab
71
AMP-T2D consortium
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
tissue
retina
3
coronary artery
2
liver
2
tibial artery
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
retinal pigment epithelial cell
1
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