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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
DNase-seq
4
ChIP-seq
Assay category
120
DNA accessibility
4
DNA binding
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Date released
114
June, 2019
8
October, 2019
2
November, 2017
Available data
412
bam
383
bed narrowPeak
351
bigWig
246
bigBed narrowPeak
124
bed broadPeak
124
bigBed broadPeak
122
bed bed3+
98
tsv
64
xls
62
txt
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
csv
4
hic
3
fastq
2
bedpe bed3+
2
hdf5
1
tar
Organism
124
Homo sapiens
Biosample type
107
tissue
17
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
0
pituitary gland
Project
124
AMP
Genome assembly (visualization)
122
GRCh38
117
hg19
Lab
124
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
124 results
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DNase-seq
ChIP-seq
tissue
muscle of arm
17
kidney
13
muscle of leg
13
renal cortex interstitium
11
renal pelvis
10
+ See 12 more…
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
+ See 5 more…
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