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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
DNase-seq
3
ChIP-seq
Assay category
40
DNA accessibility
3
DNA binding
Target of assay
histone
13
histone modification
9
narrow histone mark
4
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
35
June, 2019
3
November, 2017
3
November, 2018
1
August, 2017
1
November, 2020
Available data
635
bam
589
bigWig
504
tsv
86
fastq
75
bed narrowPeak
60
bed bed3+
54
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
22
tagAlign
7
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bedgraph
3
hdf5
1
bedpe bed3+
Organism
43
Homo sapiens
Biosample type
29
tissue
13
primary cell
1
in vitro differentiated cells
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
9
connective tissue
9
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
43
AMP
Genome assembly (visualization)
43
GRCh38
32
hg19
Lab
43
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
spinal cord
target.investigated_as!
histone
BIOSAMPLE
ASSAY
43 results
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DNase-seq
ChIP-seq
tissue
brain
14
frontal cortex
2
omental fat pad
2
Ammon's horn
1
caudate nucleus
1
+ See 9 more…
primary cell
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
astrocyte of the hippocampus
1
+ See 3 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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