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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
13
DNase-seq
2
ATAC-seq
Assay category
15
DNA accessibility
13
DNA binding
Target of assay
13
histone
13
histone modification
8
broad histone mark
5
narrow histone mark
Date released
14
August, 2017
7
June, 2019
3
November, 2018
1
March, 2019
1
November, 2020
1
October, 2017
1
October, 2019
Available data
1267
bam
1180
bigWig
888
tsv
569
fastq
283
bed narrowPeak
113
bigBed narrowPeak
80
zippedFastqFolder
53
bed bed3+
41
tagAlign
28
bed broadPeak
13
bigBed broadPeak
8
bed bedMethyl
8
bedpe bed3+
8
bigBed bedMethyl
7
hic
6
bed bed3
6
txt
4
bed bedgraph
3
cool
2
hdf5
1
bedpe
Organism
22
Homo sapiens
Biosample type
23
tissue
3
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
28
AMP
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
26
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
organ_slims!
heart
lymph node
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
islet of Langerhans
6
2
pancreas
6
2
body of pancreas
4
omental fat pad
2
subcutaneous abdominal adipose tissue
1
primary cell
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
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