Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 16DNase-seq
  • 6ChIP-seq
Assay category
  • 16DNA accessibility
  • 6DNA binding
Target of assay
  • 4histone
  • 4histone modification
  • 2RNA binding protein
  • 2broad histone mark
  • 2narrow histone mark
  • 2transcription factor
Date released
  • 14June, 2019
  • 4November, 2017
  • 4October, 2019
Available data
  • 317bam
  • 301bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 22Homo sapiens
Biosample type
  • 22primary cell
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 22AMP
Genome assembly (visualization)
  • 20GRCh38
  • 16hg19
Lab
  • 22AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

22 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein22
brain microvascular endothelial cell12
choroid plexus epithelial cell12
glomerular visceral epithelial cell2
kidney tubule cell2
epithelial cell of proximal tubule1
glomerular endothelial cell1
hepatocyte1
kidney capillary endothelial cell1
kidney epithelial cell1
kidney glomerular epithelial cell1
renal cortical epithelial cell1
retinal pigment epithelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego