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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12ChIP-seq
  • 7DNase-seq
  • 2ATAC-seq
Assay category
  • 12DNA binding
  • 9DNA accessibility
Target of assay
  • 12histone
  • 12histone modification
  • 8broad histone mark
  • 4narrow histone mark
Date released
  • 12August, 2017
  • 4June, 2019
  • 2November, 2018
  • 1March, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 689bam
  • 623bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 15Homo sapiens
Biosample type
  • 20tissue
  • 1cell line
Organ
  • 78kidney
  • 63liver
  • 47brain
  • 46musculature of body
  • 36limb
  • 30heart
  • 22epithelium
  • 21pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 21AMP
Genome assembly (visualization)
  • 18hg19
  • 14GRCh38
Lab
  • 19AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

21 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
islet of Langerhans62
pancreas62
body of pancreas4
cell line
Panc11
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