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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 182DNase-seq
  • 114ChIP-seq
Assay category
  • 182DNA accessibility
  • 114DNA binding
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 164June, 2019
  • 70November, 2017
  • 41August, 2017
  • 9October, 2019
  • 8November, 2018
  • 3October, 2017
  • 1November, 2020
Available data
  • 2909bam
  • 2702bigWig
  • 1644bed narrowPeak
  • 1298tsv
  • 1229fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 282tagAlign
  • 261bigBed broadPeak
  • 205bed bed3+
  • 156txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 16bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4tar
  • 2ibed
  • 1vcf
Organism
  • 290Homo sapiens
Biosample type
  • 190tissue
  • 59cell line
  • 46primary cell
  • 1in vitro differentiated cells
Organ
  • 73kidney
  • 62liver
  • 46musculature of body
  • 38brain
  • 36limb
  • 23heart
  • 20epithelium
  • 19pancreas
  • 18ureter
  • 17vasculature
  • 13blood vessel
  • 9connective tissue
  • 4artery
  • 4vein
  • 3adipose tissue
  • 2eye
  • 2nerve
  • 1spleen
Project
  • 296AMP
Genome assembly (visualization)
  • 283hg19
  • 257GRCh38
Lab
  • 296AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
  • 2inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

296 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm17
brain123
heart14
muscle of leg13
skeletal muscle tissue13
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast113
endothelial cell of umbilical vein22
astrocyte of the cerebellum12
brain microvascular endothelial cell12
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
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