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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 186DNase-seq
  • 35ChIP-seq
  • 2ATAC-seq
Assay category
  • 188DNA accessibility
  • 35DNA binding
Target of assay
  • 35histone
  • 35histone modification
  • 20broad histone mark
  • 15narrow histone mark
Date released
  • 171June, 2019
  • 26August, 2017
  • 9November, 2018
  • 6November, 2017
  • 5October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 2716bam
  • 2558bigWig
  • 1531tsv
  • 1262bed narrowPeak
  • 857fastq
  • 553bigBed narrowPeak
  • 372tagAlign
  • 234bed bed3+
  • 223bed broadPeak
  • 186bigBed broadPeak
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 19hic
  • 17bedpe bed3+
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 11bed bed3
  • 8csv
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 217Homo sapiens
Biosample type
  • 212tissue
  • 11primary cell
Organ
  • 72kidney
  • 46musculature of body
  • 36brain
  • 36limb
  • 28heart
  • 20pancreas
  • 18ureter
  • 7blood vessel
  • 7connective tissue
  • 7vasculature
  • 6epithelium
  • 5liver
  • 4artery
  • 3adipose tissue
  • 3eye
  • 2nerve
  • 1spleen
  • 1vein
Project
  • 223AMP
Genome assembly (visualization)
  • 202hg19
  • 201GRCh38
Lab
  • 221AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

223 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
primary cell
kidney tubule cell2
brain pericyte1
cardiac fibroblast1
endothelial cell of umbilical vein1
hepatic stellate cell1
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