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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
188
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
171
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
5
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2716
bam
2558
bigWig
1531
tsv
1262
bed narrowPeak
857
fastq
553
bigBed narrowPeak
372
tagAlign
234
bed bed3+
223
bed broadPeak
186
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
19
hic
17
bedpe bed3+
16
bed bedMethyl
16
bigBed bedMethyl
11
bed bed3
8
csv
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
217
Homo sapiens
Biosample type
212
tissue
11
primary cell
Organ
72
kidney
46
musculature of body
36
brain
36
limb
28
heart
20
pancreas
18
ureter
7
blood vessel
7
connective tissue
7
vasculature
6
epithelium
5
liver
4
artery
3
adipose tissue
3
eye
2
nerve
1
spleen
1
vein
Project
223
AMP
Genome assembly (visualization)
202
hg19
201
GRCh38
Lab
221
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
replication_type!
isogenic
BIOSAMPLE
ASSAY
223 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 44 more…
primary cell
kidney tubule cell
2
brain pericyte
1
cardiac fibroblast
1
endothelial cell of umbilical vein
1
hepatic stellate cell
1
+ See 5 more…
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