Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 44DNase-seq
  • 2ATAC-seq
Assay category
  • 79DNA binding
  • 46DNA accessibility
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 64November, 2017
  • 39June, 2019
  • 15August, 2017
  • 4October, 2019
  • 1March, 2019
  • 1November, 2018
  • 1October, 2017
Available data
  • 1159bam
  • 1078bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 125Homo sapiens
Biosample type
  • 59cell line
  • 41primary cell
  • 24tissue
  • 1in vitro differentiated cells
Organ
  • 59liver
  • 20brain
  • 18epithelium
  • 11kidney
  • 10vasculature
  • 9heart
  • 6blood vessel
  • 4connective tissue
  • 3eye
  • 3pancreas
  • 3vein
Project
  • 125AMP
Genome assembly (visualization)
  • 111hg19
  • 106GRCh38
Lab
  • 123AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

125 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast131
astrocyte of the cerebellum21
brain microvascular endothelial cell21
cardiac fibroblast3
choroid plexus epithelial cell21
tissue
heart4
brain2
frontal cortex2
islet of Langerhans2
kidney2
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego