Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 24DNase-seq
  • 2ATAC-seq
Assay category
  • 26DNA accessibility
Date released
  • 23June, 2019
  • 1March, 2019
  • 1November, 2018
  • 1October, 2017
Available data
  • 483bam
  • 467bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 26Homo sapiens
Biosample type
  • 23tissue
  • 3primary cell
Organ
  • 9brain
  • 7heart
  • 5kidney
  • 2epithelium
  • 2eye
  • 2pancreas
  • 1connective tissue
  • 1liver
Project
  • 26AMP
Genome assembly (visualization)
  • 25GRCh38
  • 15hg19
Lab
  • 24AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
BIOSAMPLE
ASSAY

26 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ATAC-seq
tissue
heart4
brain2
frontal cortex2
islet of Langerhans2
kidney2
primary cell
cardiac fibroblast1
kidney glomerular epithelial cell1
kidney tubule cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego