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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 20DNase-seq
Assay category
  • 79DNA binding
  • 20DNA accessibility
Target of assay
  • 49transcription factor
  • 30histone
  • 30histone modification
  • 16broad histone mark
  • 14narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 64November, 2017
  • 16June, 2019
  • 15August, 2017
  • 4October, 2019
Available data
  • 676bam
  • 611bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 99Homo sapiens
Biosample type
  • 59cell line
  • 38primary cell
  • 1in vitro differentiated cells
  • 1tissue
Organ
  • 58liver
  • 16epithelium
  • 11brain
  • 10vasculature
  • 6blood vessel
  • 6kidney
  • 3connective tissue
  • 3vein
  • 2heart
  • 1eye
  • 1pancreas
Project
  • 99AMP
Genome assembly (visualization)
  • 96hg19
  • 81GRCh38
Lab
  • 99AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 13inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

99 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG258
Panc11
primary cell
skeletal muscle myoblast131
astrocyte of the cerebellum21
brain microvascular endothelial cell21
choroid plexus epithelial cell21
endothelial cell of umbilical vein21
in vitro differentiated cells
adipocyte1
tissue
middle frontal gyrus1
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