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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
20
DNase-seq
Assay category
79
DNA binding
20
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
16
June, 2019
15
August, 2017
4
October, 2019
Available data
676
bam
611
bigWig
555
bed narrowPeak
501
fastq
489
bigBed narrowPeak
99
bed broadPeak
99
bigBed broadPeak
69
tsv
39
bed bed3+
26
tagAlign
20
bed bedMethyl
20
bigBed bedMethyl
7
bed bedgraph
6
bedpe bed3+
5
hdf5
4
hic
4
tar
3
txt
2
ibed
1
bed bed3
Organism
99
Homo sapiens
Biosample type
59
cell line
38
primary cell
1
in vitro differentiated cells
1
tissue
Organ
58
liver
16
epithelium
11
brain
10
vasculature
6
blood vessel
6
kidney
3
connective tissue
3
vein
2
heart
1
eye
1
pancreas
Project
99
AMP
Genome assembly (visualization)
96
hg19
81
GRCh38
Lab
99
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
endothelial cell of umbilical vein
2
1
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in vitro differentiated cells
adipocyte
1
tissue
middle frontal gyrus
1
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