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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 105ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 105DNA binding
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 63November, 2017
  • 39August, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3289bam
  • 3063bigWig
  • 1712bed narrowPeak
  • 1600tsv
  • 1269fastq
  • 949bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 271bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 307Homo sapiens
Biosample type
  • 213tissue
  • 55cell line
  • 44primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 59liver
  • 46musculature of body
  • 44brain
  • 36limb
  • 30heart
  • 21pancreas
  • 20epithelium
  • 18ureter
  • 15vasculature
  • 12blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 313AMP
Genome assembly (visualization)
  • 289hg19
  • 275GRCh38
Lab
  • 311AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

313 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
cell line
HepG254
Panc11
primary cell
skeletal muscle myoblast111
endothelial cell of umbilical vein22
cardiac fibroblast3
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte1
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