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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 78ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 78DNA binding
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 60November, 2017
  • 19August, 2017
  • 9November, 2018
  • 7October, 2019
  • 2October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 3014bam
  • 2742bigWig
  • 1600tsv
  • 1397bed narrowPeak
  • 1240fastq
  • 800bigBed narrowPeak
  • 286bed broadPeak
  • 269bigBed broadPeak
  • 261bed bed3+
  • 251tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 284Homo sapiens
Biosample type
  • 193tissue
  • 51cell line
  • 41primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 55liver
  • 43brain
  • 38musculature of body
  • 36limb
  • 30heart
  • 20epithelium
  • 18ureter
  • 15vasculature
  • 13pancreas
  • 11blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 3adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 286AMP
Genome assembly (visualization)
  • 262hg19
  • 261GRCh38
Lab
  • 284AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 7inconsistent control read length
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

286 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
brain141
kidney13
muscle of leg13
cell line
HepG250
Panc11
primary cell
skeletal muscle myoblast17
astrocyte of the cerebellum12
brain microvascular endothelial cell12
cardiac fibroblast3
choroid plexus epithelial cell12
in vitro differentiated cells
adipocyte1
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