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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 49ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 49DNA binding
Target of assay
  • histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 47November, 2017
  • 9November, 2018
  • 7October, 2019
  • 4August, 2017
  • 1March, 2019
  • 1November, 2020
  • 1October, 2017
Available data
  • 2608bam
  • 2301bigWig
  • 1600tsv
  • 1129fastq
  • 967bed narrowPeak
  • 651bigBed narrowPeak
  • 257bed broadPeak
  • 255bigBed broadPeak
  • 248bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 77tagAlign
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 257Homo sapiens
Biosample type
  • 178tissue
  • 45cell line
  • 33primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 49liver
  • 36limb
  • 35brain
  • 33musculature of body
  • 30heart
  • 18epithelium
  • 18ureter
  • 13vasculature
  • 10blood vessel
  • 9connective tissue
  • 9pancreas
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 257AMP
Genome assembly (visualization)
  • 242GRCh38
  • 233hg19
Lab
  • 255AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2inconsistent control read length
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

257 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG244
Panc11
primary cell
cardiac fibroblast3
skeletal muscle myoblast12
astrocyte of the cerebellum11
brain microvascular endothelial cell11
choroid plexus epithelial cell11
in vitro differentiated cells
adipocyte1
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