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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 85ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 85DNA binding
Target of assay
  • 65histone
  • 65histone modification
  • 49transcription factor
  • 36broad histone mark
  • narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 57November, 2017
  • 26August, 2017
  • 9November, 2018
  • 9October, 2019
  • 3October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 2987bam
  • 2729bigWig
  • 1600tsv
  • 1388bed narrowPeak
  • 1248fastq
  • 893bigBed narrowPeak
  • 293bed broadPeak
  • 271bigBed broadPeak
  • 260bed bed3+
  • 224tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 289Homo sapiens
Biosample type
  • 198tissue
  • 53cell line
  • 41primary cell
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 57liver
  • 41musculature of body
  • 39brain
  • 36limb
  • 30heart
  • 20epithelium
  • 18ureter
  • 17pancreas
  • 15vasculature
  • 12blood vessel
  • 9connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 293AMP
Genome assembly (visualization)
  • 269hg19
  • 263GRCh38
Lab
  • 291AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 1missing controlled_by
Audit category:
  • 8inconsistent control read length
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

293 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
muscle of arm17
brain142
kidney13
muscle of leg13
cell line
HepG252
Panc11
primary cell
skeletal muscle myoblast18
endothelial cell of umbilical vein22
cardiac fibroblast3
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte1
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