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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • 65ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
  • 65DNA binding
Target of assay
  • 65histone
  • 65histone modification
  • transcription factor
  • 36broad histone mark
  • 29narrow histone mark
  • 9RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 187June, 2019
  • 39August, 2017
  • 23November, 2017
  • 9November, 2018
  • 9October, 2019
  • 4October, 2017
  • 1March, 2019
  • 1November, 2020
Available data
  • 2907bam
  • 2673bigWig
  • 1600tsv
  • 1348bed narrowPeak
  • 904fastq
  • 637bigBed narrowPeak
  • 389tagAlign
  • 273bed broadPeak
  • 254bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 267Homo sapiens
Biosample type
  • 213tissue
  • 44primary cell
  • 15cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 46musculature of body
  • 44brain
  • 36limb
  • 30heart
  • 21pancreas
  • 20epithelium
  • 19liver
  • 18ureter
  • 15vasculature
  • 12blood vessel
  • 10connective tissue
  • 4artery
  • 4eye
  • 4vein
  • 3adipose tissue
  • 2nerve
  • 1spleen
Project
  • 273AMP
Genome assembly (visualization)
  • 249hg19
  • 246GRCh38
Lab
  • 271AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

273 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart18
brain143
muscle of arm17
kidney13
muscle of leg13
primary cell
skeletal muscle myoblast111
endothelial cell of umbilical vein22
cardiac fibroblast3
astrocyte of the cerebellum11
brain microvascular endothelial cell11
cell line
HepG214
Panc11
in vitro differentiated cells
adipocyte1
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