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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
86
ATAC-seq
Assay category
106
DNA binding
86
DNA accessibility
Target of assay
90
histone
90
histone modification
53
broad histone mark
37
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
80
August, 2021
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
3094
bigWig
1706
bed narrowPeak
1558
tsv
1209
fastq
1028
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
7
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
bed bed3
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
192
Homo sapiens
Biosample type
146
tissue
30
primary cell
14
cell line
2
in vitro differentiated cells
Organ
64
kidney
41
heart
34
liver
13
musculature of body
6
pancreas
3
connective tissue
1
adipose tissue
1
brain
Project
192
AMP
Genome assembly (visualization)
104
GRCh38
88
hg19
Lab
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
22
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
files.file_type!
bam
txt
month_released!
February, 2023
September, 2018
BIOSAMPLE
ASSAY
192 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
kidney
64
left cardiac atrium
40
liver
20
skeletal muscle tissue
13
islet of Langerhans
6
+ See 3 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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