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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
86
ChIP-seq
Assay category
151
DNA accessibility
86
DNA binding
Target of assay
70
histone
70
histone modification
41
broad histone mark
29
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
80
August, 2021
65
February, 2023
40
May, 2024
30
May, 2021
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2866
bigWig
1638
bed narrowPeak
1491
tsv
1071
fastq
1000
bigBed narrowPeak
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
240
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
vcf
Organism
237
Homo sapiens
Biosample type
189
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
76
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
12
epithelium
3
connective tissue
1
adipose tissue
1
brain
Project
237
AMP
Genome assembly (visualization)
139
GRCh38
98
hg19
Lab
65
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
vcf
month_released!
August, 2017
November, 2019
BIOSAMPLE
ASSAY
237 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
+ See 4 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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