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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ATAC-seq
64
ChIP-seq
Assay category
95
DNA accessibility
64
DNA binding
Target of assay
53
histone
53
histone modification
33
broad histone mark
20
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
30
May, 2021
29
February, 2023
19
August, 2017
1
November, 2017
Available data
bam
2500
bigWig
1593
bed narrowPeak
1314
fastq
1031
tsv
938
bigBed narrowPeak
384
tagAlign
289
bed broadPeak
253
bigBed broadPeak
237
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
20
hic
19
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
159
Homo sapiens
Biosample type
111
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
27
eye
14
liver
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
adipose tissue
1
brain
Project
159
AMP
Genome assembly (visualization)
95
hg19
64
GRCh38
Lab
64
Katalin Susztak, Upenn
47
AMP-T2D consortium
30
Kyle Gaulton, UCSD
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
lab.title!
Karen Mohlke, UNC
organ_slims!
adipose tissue
heart
BIOSAMPLE
ASSAY
159 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
islet of Langerhans
6
+ See 1 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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