Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
ChIP-seq
87
ATAC-seq
Assay category
105
DNA binding
87
DNA accessibility
Target of assay
89
histone
89
histone modification
53
broad histone mark
36
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
65
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
16
August, 2021
1
April, 2019
November, 2017
Available data
bam
2835
bigWig
1599
tsv
1440
bed narrowPeak
1034
fastq
730
bigBed narrowPeak
320
tagAlign
273
bed bed3+
252
bed broadPeak
221
bigBed broadPeak
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
192
Homo sapiens
Biosample type
144
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
76
heart
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
Project
192
AMP
Genome assembly (visualization)
117
hg19
75
GRCh38
Lab
84
AMP-T2D consortium
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
lab.title!
Katalin Susztak, Upenn
month_released!
November, 2017
organ_slims!
thymus
BIOSAMPLE
ASSAY
192 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
skeletal muscle tissue
13
+ See 5 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
Download