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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ATAC-seq
5
ChIP-seq
Assay category
85
DNA accessibility
5
DNA binding
Target of assay
87
histone
histone modification
52
broad histone mark
35
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
August, 2021
65
February, 2023
20
May, 2022
5
May, 2024
Available data
bam
2262
bigWig
1471
tsv
959
fastq
879
bed narrowPeak
651
bigBed narrowPeak
257
bed broadPeak
255
bigBed broadPeak
246
bed bed3+
104
txt
69
tagAlign
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
18
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
2
ibed
1
bedpe
Organism
90
Homo sapiens
Biosample type
88
tissue
2
in vitro differentiated cells
Organ
40
heart
35
artery
35
blood vessel
35
vasculature
27
eye
20
liver
12
epithelium
1
adipose tissue
1
connective tissue
Project
90
AMP
Genome assembly (visualization)
50
hg19
40
GRCh38
Lab
63
AMP-T2D consortium
20
Karen Mohlke, UNC
5
Patrick T. Ellinor, Broad
2
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
lab.title!
Klaus Kaestner, Upenn
month_released!
August, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
coronary artery
35
liver
20
retina
15
pigmented layer of retina
12
left cardiac atrium
5
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in vitro differentiated cells
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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