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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
76
ChIP-seq
Assay category
151
DNA accessibility
76
DNA binding
Target of assay
60
histone
60
histone modification
33
broad histone mark
27
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
80
August, 2021
65
February, 2023
40
May, 2024
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
2846
bigWig
bam
1684
bed narrowPeak
1424
tsv
1189
fastq
1042
bigBed narrowPeak
321
bed broadPeak
285
bigBed broadPeak
262
bed bed3+
241
tagAlign
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
tagAlign bed3+
1
vcf
Organism
227
Homo sapiens
Biosample type
209
tissue
14
cell line
4
in vitro differentiated cells
Organ
76
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
227
AMP
Genome assembly (visualization)
139
GRCh38
88
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bam
month_released!
March, 2019
May, 2021
target.investigated_as!
control
BIOSAMPLE
ASSAY
227 results
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ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
+ See 7 more…
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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