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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 151ATAC-seq
  • 106ChIP-seq
Assay category
  • 151DNA accessibility
  • 106DNA binding
Target of assay
  • 90histone
  • 90histone modification
  • 53broad histone mark
  • 37narrow histone mark
  • 16transcription factor
  • 6RNA binding protein
Date released
  • 80August, 2021
  • 65February, 2023
  • 40May, 2024
  • 30May, 2021
  • 20August, 2017
  • 20May, 2022
  • 1April, 2019
  • 1November, 2017
Available data
  • bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 257Homo sapiens
Biosample type
  • 209tissue
  • 30primary cell
  • 14cell line
  • 4in vitro differentiated cells
Organ
  • 76heart
  • 64kidney
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 34liver
  • 27eye
  • 13musculature of body
  • 12epithelium
  • 6pancreas
  • 4connective tissue
  • 2adipose tissue
  • 1brain
Project
  • 257AMP
Genome assembly (visualization)
  • 139GRCh38
  • 118hg19
Lab
  • 85AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 30Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 1inconsistent ontology term
files.file_type!
  • bam
BIOSAMPLE
ASSAY

257 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney64
left cardiac atrium40
coronary artery35
liver20
retina15
primary cell
CD8-positive, alpha-beta T cell30
cell line
HepG214
in vitro differentiated cells
adipocyte1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
osteoblast1
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