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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
23
ATAC-seq
Assay category
132
DNA binding
23
DNA accessibility
Target of assay
94
transcription factor
38
histone modification
37
histone
24
RNA binding protein
21
broad histone mark
16
narrow histone mark
15
recombinant protein
8
chromatin remodeller
Date released
November, 2017
50
December, 2017
48
November, 2018
20
May, 2022
16
August, 2017
14
August, 2021
6
October, 2019
1
February, 2021
Available data
367
bam
354
bigWig
192
bed narrowPeak
174
tsv
150
fastq
109
bigBed narrowPeak
tagAlign
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
155
Homo sapiens
Biosample type
81
tissue
59
cell line
14
in vitro differentiated cells
1
primary cell
Organ
183
pancreas
157
heart
155
liver
126
epithelium
114
blood vessel
114
vasculature
105
kidney
70
brain
66
artery
60
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
25
nerve
14
musculature of body
13
spleen
12
embryo
11
vein
10
adipose tissue
8
bone element
8
skeleton
Project
155
AMP
Genome assembly (visualization)
153
hg19
121
GRCh38
Lab
121
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3+
tagAlign
month_released!
November, 2017
BIOSAMPLE
ASSAY
155 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
liver
53
20
right lobe of liver
7
1
cell line
HepG2
58
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
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