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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
8
ATAC-seq
1
DNase-seq
Assay category
52
DNA binding
9
DNA accessibility
Target of assay
35
histone
35
histone modification
18
narrow histone mark
17
transcription factor
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
40
August, 2017
9
June, 2019
5
October, 2018
2
August, 2021
1
February, 2021
1
February, 2023
1
November, 2019
1
November, 2020
1
October, 2017
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
61
Homo sapiens
Biosample type
39
in vitro differentiated cells
11
primary cell
11
tissue
Organ
431
liver
197
pancreas
171
brain
161
heart
132
epithelium
122
vasculature
120
blood vessel
105
kidney
70
artery
61
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
27
musculature of body
25
nerve
13
spleen
12
embryo
11
adipose tissue
vein
8
bone element
8
skeleton
1
pituitary gland
Project
61
AMP
Genome assembly (visualization)
61
hg19
57
GRCh38
Lab
59
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed bed3+
organ_slims!
intestine
vein
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
36
1
1
osteoblast
1
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
osteoblast
2
tissue
omental fat pad
3
1
subcutaneous adipose tissue
2
1
adipose tissue
1
1
adipose tissue(adipose white tissue)
1
subcutaneous abdominal adipose tissue
1
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