Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
24
ATAC-seq
Assay category
420
DNA binding
24
DNA accessibility
Target of assay
333
transcription factor
84
histone modification
83
histone
81
recombinant protein
56
RNA binding protein
51
narrow histone mark
32
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
16
August, 2017
14
August, 2021
6
January, 2019
6
October, 2019
3
December, 2018
1
February, 2021
1
October, 2017
Available data
705
bam
638
bigWig
489
fastq
455
bed narrowPeak
371
bigBed narrowPeak
175
tsv
86
tagAlign
64
bed broadPeak
64
bigBed broadPeak
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
444
Homo sapiens
Biosample type
308
cell line
121
tissue
14
in vitro differentiated cells
1
primary cell
Organ
431
liver
197
pancreas
171
brain
161
heart
132
epithelium
122
vasculature
120
blood vessel
105
kidney
70
artery
61
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
27
musculature of body
25
nerve
13
spleen
12
embryo
11
adipose tissue
11
vein
8
bone element
skeleton
1
pituitary gland
Project
444
AMP
Genome assembly (visualization)
440
hg19
370
GRCh38
Lab
410
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
skeleton
BIOSAMPLE
ASSAY
444 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
307
1
tissue
liver
80
20
spleen
12
1
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
Download