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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
8
ATAC-seq
Assay category
23
DNA binding
8
DNA accessibility
Target of assay
histone
34
histone modification
23
transcription factor
17
narrow histone mark
16
broad histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
18
August, 2017
5
October, 2018
2
August, 2021
1
February, 2021
1
February, 2023
1
June, 2019
1
November, 2019
1
November, 2020
1
October, 2017
Available data
559
bam
535
bigWig
478
tsv
75
fastq
40
bed narrowPeak
27
bed bed3+
19
bigBed narrowPeak
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
3
tagAlign
1
bedpe bed3+
1
hdf5
Organism
31
Homo sapiens
Biosample type
19
in vitro differentiated cells
9
tissue
3
primary cell
Organ
316
liver
80
pancreas
75
kidney
64
heart
54
blood vessel
54
vasculature
53
blood
53
bodily fluid
50
artery
45
epithelium
31
connective tissue
28
eye
9
adipose tissue
8
bone element
8
limb
skeleton
7
spleen
3
embryo
1
brain
1
nerve
1
vein
Project
31
AMP
Genome assembly (visualization)
31
hg19
28
GRCh38
Lab
29
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
6
inconsistent control read length
files.file_type!
bed broadPeak
organ_slims!
skeleton
target.investigated_as!
histone
BIOSAMPLE
ASSAY
31 results
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Clear Filters
ChIP-seq
ATAC-seq
in vitro differentiated cells
adipocyte
17
1
osteoblast
1
tissue
omental fat pad
3
1
subcutaneous adipose tissue
2
1
adipose tissue
1
adipose tissue(adipose white tissue)
1
primary cell
osteoblast
2
cardiac fibroblast
1
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