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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
361
ChIP-seq
23
ATAC-seq
Assay category
361
DNA binding
23
DNA accessibility
Target of assay
289
transcription factor
81
recombinant protein
69
histone modification
68
histone
52
RNA binding protein
46
narrow histone mark
22
broad histone mark
19
chromatin remodeller
1
other context
1
other post-translational modification
Date released
197
November, 2017
50
December, 2017
48
November, 2018
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
1
February, 2021
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
384
Homo sapiens
Biosample type
256
cell line
110
tissue
14
in vitro differentiated cells
4
primary cell
Organ
384
liver
195
pancreas
161
heart
156
brain
131
epithelium
118
blood vessel
118
vasculature
105
kidney
70
artery
65
connective tissue
56
limb
54
blood
54
bodily fluid
29
eye
25
nerve
14
embryo
14
musculature of body
13
spleen
11
vein
10
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
384
AMP
Genome assembly (visualization)
380
hg19
318
GRCh38
Lab
350
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
384 results
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ChIP-seq
ATAC-seq
cell line
HepG2
255
1
tissue
liver
82
20
right lobe of liver
7
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
Liver fetal (hepatocyte)
1
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