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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1219ChIP-seq
  • 278ATAC-seq
  • 5FAIRE-seq
  • 3DNase-seq
Assay category
  • 1219DNA binding
  • 286DNA accessibility
Target of assay
  • 790histone modification
  • 789histone
  • 424transcription factor
  • 401narrow histone mark
  • 387broad histone mark
  • 96RNA binding protein
  • 88recombinant protein
  • 31chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 249November, 2017
  • 182October, 2019
  • 133May, 2021
  • 106August, 2021
  • 101August, 2017
  • 97May, 2019
  • 72December, 2017
  • 65April, 2019
  • 65February, 2023
  • 64November, 2018
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 23February, 2021
  • 23June, 2019
  • 21January, 2019
  • 16February, 2018
  • 9October, 2017
  • 7July, 2019
  • 5September, 2017
  • 3March, 2020
  • 1November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1505Homo sapiens
Biosample type
  • 773tissue
  • 351cell line
  • 248primary cell
  • 131in vitro differentiated cells
  • 2stem cell
Organ
  • 384liver
  • 195pancreas
  • 161heart
  • 156brain
  • 131epithelium
  • 118blood vessel
  • 118vasculature
  • 105kidney
  • 70artery
  • 65connective tissue
  • 56limb
  • 54blood
  • 54bodily fluid
  • 29eye
  • 25nerve
  • 14embryo
  • 14musculature of body
  • 13spleen
  • 11vein
  • 10adipose tissue
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1417AMP
  • 88T1D
Genome assembly (visualization)
  • 1351GRCh38
  • 1309hg19
Lab
  • 1231AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 59inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 46missing controlled_by
Audit category:
  • 43inconsistent control read length
  • 9inconsistent control run_type
  • 1inconsistent assembly
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

1505 results

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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver8220
kidney20641
islet of Langerhans143711
left cardiac atrium40
coronary artery336
cell line
HepG22551
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc16
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
pancreatic beta cell77
pancreatic acinar cell85
in vitro differentiated cells
adipocyte421
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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