Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 524ChIP-seq
  • 254ATAC-seq
Assay category
  • 524DNA binding
  • 254DNA accessibility
Target of assay
  • 460histone modification
  • 459histone
  • 280narrow histone mark
  • 178broad histone mark
  • 64transcription factor
  • 12RNA binding protein
  • 7recombinant protein
  • 2chromatin remodeller
Date released
  • 133May, 2021
  • 122October, 2019
  • 106August, 2021
  • 100August, 2017
  • 65February, 2023
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 32September, 2018
  • 27May, 2020
  • 23February, 2021
  • 22December, 2017
  • 16February, 2018
  • 6October, 2017
  • 5July, 2019
  • 3March, 2020
  • 1April, 2019
  • 1November, 2017
  • 1November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 778Homo sapiens
Biosample type
  • 424tissue
  • 186primary cell
  • 117in vitro differentiated cells
  • 49cell line
  • 2stem cell
Organ
  • 123pancreas
  • 97heart
  • 83liver
  • 79kidney
  • 76brain
  • 75epithelium
  • 50blood vessel
  • 50connective tissue
  • 50vasculature
  • 49artery
  • 27eye
  • 14embryo
  • 13musculature of body
  • 8bone element
  • 8limb
  • 8skeleton
  • 4adipose tissue
  • 1nerve
  • 1pituitary gland
  • 1spleen
Project
  • 690AMP
  • 88T1D
Genome assembly (visualization)
  • 638hg19
  • 634GRCh38
Lab
  • 504AMP-T2D consortium
  • 132Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 39inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 33missing controlled_by
Audit category:
  • 23inconsistent control read length
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

778 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
tissue
kidney264
liver4420
islet of Langerhans2037
left cardiac atrium40
coronary artery36
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell13
pancreatic endocrine cell11
pancreatic acinar cell8
in vitro differentiated cells
adipocyte421
neural progenitor cell1310
pancreatic endoderm12
definitive endodermal cell6
primitive gut cell6
cell line
HepG2141
EndoC_BH1131
smooth muscle cell of the coronary artery48
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego