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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
ATAC-seq
1
ChIP-seq
Assay category
169
DNA accessibility
1
DNA binding
Target of assay
1
broad histone mark
1
histone
1
histone modification
Date released
74
August, 2021
28
February, 2023
26
November, 2019
18
May, 2022
13
May, 2021
9
February, 2021
October, 2019
1
November, 2017
1
November, 2020
Available data
2994
bam
bigWig
1529
bed narrowPeak
1500
tsv
1285
fastq
953
bigBed narrowPeak
343
tagAlign
311
bed broadPeak
274
bigBed broadPeak
263
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
170
Homo sapiens
Biosample type
139
tissue
15
in vitro differentiated cells
14
primary cell
2
cell line
Organ
64
kidney
artery
43
blood vessel
43
heart
43
vasculature
38
pancreas
27
eye
13
epithelium
8
bone element
8
skeleton
6
limb
3
connective tissue
2
adipose tissue
1
brain
1
liver
Project
170
AMP
Genome assembly (visualization)
124
GRCh38
105
hg19
Lab
88
AMP-T2D consortium
64
Katalin Susztak, Upenn
18
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
1
inconsistent replicate
files.file_type!
bigWig
month_released!
October, 2019
September, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
170 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
islet of Langerhans
37
retina
15
pigmented layer of retina
12
adipose tissue
1
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in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
monocyte
13
osteoblast
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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