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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 216ATAC-seq
  • 1ChIP-seq
Assay category
  • 216DNA accessibility
  • 1DNA binding
Target of assay
  • 1broad histone mark
  • 1histone
  • 1histone modification
Date released
  • 74August, 2021
  • 63February, 2023
  • 26November, 2019
  • 18May, 2022
  • 17February, 2021
  • 13May, 2021
  • 4October, 2019
  • 1November, 2017
  • 1November, 2020
Available data
  • 3392bam
  • bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 217Homo sapiens
Biosample type
  • 174tissue
  • 17in vitro differentiated cells
  • 16primary cell
  • 10cell line
Organ
  • 64kidney
  • 43artery
  • 43blood vessel
  • 43heart
  • 43vasculature
  • 38pancreas
  • 27eye
  • 14epithelium
  • 8bone element
  • 8skeleton
  • 6limb
  • 3connective tissue
  • 2adipose tissue
  • 2liver
  • 1brain
Project
  • 217AMP
Genome assembly (visualization)
  • 171GRCh38
  • 117hg19
Lab
  • 135AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 18Kyle Gaulton, UCSD
Audit category:
  • 11inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

217 results

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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney64
islet of Langerhans37
coronary artery35
retina15
pigmented layer of retina12
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
primary cell
monocyte13
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
osteoblast1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
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