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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 687ChIP-seq
  • 230ATAC-seq
  • 197DNase-seq
  • 3FAIRE-seq
Assay category
  • 687DNA binding
  • 430DNA accessibility
Target of assay
  • 640histone
  • 640histone modification
  • 331narrow histone mark
  • 309broad histone mark
  • 47transcription factor
  • 19RNA binding protein
  • 7recombinant protein
Date released
  • 210June, 2019
  • 189October, 2019
  • 133May, 2021
  • 106August, 2021
  • 97May, 2019
  • 65April, 2019
  • 65February, 2023
  • 58November, 2017
  • 40May, 2024
  • 37November, 2019
  • 27May, 2020
  • 23February, 2021
  • 21August, 2017
  • 20May, 2022
  • 14October, 2018
  • 7July, 2019
  • 3March, 2020
  • 2November, 2020
Available data
  • 3392bam
  • 3169bigWig
  • 1817bed narrowPeak
  • 1600tsv
  • fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1117Homo sapiens
Biosample type
  • 815tissue
  • 206primary cell
  • 57cell line
  • 39in vitro differentiated cells
Organ
  • 191heart
  • 189brain
  • 183kidney
  • 129vasculature
  • 127blood vessel
  • 92limb
  • 74artery
  • 74epithelium
  • 73liver
  • 69pancreas
  • 60musculature of body
  • 33eye
  • 27nerve
  • 23connective tissue
  • 18ureter
  • 13vein
  • 8bone element
  • 8skeleton
  • 4adipose tissue
  • 1pituitary gland
Project
  • 1029AMP
  • 88T1D
Genome assembly (visualization)
  • 986GRCh38
  • 902hg19
Lab
  • 861AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 61inconsistent ontology term
  • 1inconsistent replicate
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

1117 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney2064131
liver3220
coronary artery3362
left cardiac atrium401
heart left ventricle2923
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
endothelial cell of umbilical vein1021
epithelial cell of proximal tubule81
skeletal muscle satellite cell7
cell line
HepG2141
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
RCC 7860 HIF1a re-expression3
in vitro differentiated cells
neural progenitor cell1310
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cardiomyocytes3
pancreatic PP cell2
adipocyte1
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