Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
5
DNase-seq
3
ATAC-seq
Assay category
374
DNA binding
8
DNA accessibility
Target of assay
329
transcription factor
81
recombinant protein
56
RNA binding protein
42
histone modification
41
histone
23
broad histone mark
23
chromatin remodeller
18
narrow histone mark
2
other context
2
other post-translational modification
Date released
240
November, 2017
51
November, 2018
50
December, 2017
18
August, 2017
14
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
681
bam
602
bigWig
465
fastq
421
bed narrowPeak
358
bigBed narrowPeak
175
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
382
Homo sapiens
Biosample type
299
cell line
66
tissue
14
in vitro differentiated cells
3
primary cell
Organ
382
liver
200
pancreas
187
heart
183
kidney
146
epithelium
129
vasculature
125
blood vessel
120
brain
92
limb
74
connective tissue
70
artery
54
blood
54
bodily fluid
47
musculature of body
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
vein
12
adipose tissue
8
bone element
8
skeleton
0
stomach
Project
382
AMP
Genome assembly (visualization)
378
hg19
336
GRCh38
Lab
368
AMP-T2D consortium
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
382 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
298
1
tissue
liver
55
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
Download