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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
95
DNA binding
10
DNA accessibility
Target of assay
71
histone modification
70
histone
35
narrow histone mark
34
broad histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
258
November, 2017
204
June, 2019
149
October, 2019
105
August, 2017
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
46
September, 2018
45
October, 2018
37
November, 2019
36
February, 2023
30
December, 2018
21
January, 2019
18
February, 2021
16
February, 2018
14
May, 2021
10
August, 2021
7
July, 2019
6
October, 2017
5
September, 2017
3
March, 2020
2
November, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
43
in vitro differentiated cells
40
tissue
22
primary cell
Organ
45
connective tissue
37
pancreas
18
liver
17
epithelium
2
adipose tissue
Project
105
AMP
Genome assembly (visualization)
105
hg19
101
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
organ_slims!
eye
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
in vitro differentiated cells
adipocyte
42
1
tissue
liver
17
islet of Langerhans
12
1
1
pancreas
6
adipose tissue
1
right lobe of liver
1
+ See 1 more…
primary cell
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
skeletal muscle myoblast
3
2
pancreatic acinar cell
1
See all biosamples
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