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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
23
ATAC-seq
5
DNase-seq
Assay category
408
DNA binding
28
DNA accessibility
Target of assay
326
transcription factor
81
histone modification
81
recombinant protein
80
histone
55
RNA binding protein
51
narrow histone mark
29
broad histone mark
23
chromatin remodeller
other context
2
other post-translational modification
Date released
244
November, 2017
51
November, 2018
50
December, 2017
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
6
October, 2019
2
June, 2019
1
February, 2021
Available data
679
bam
620
bigWig
463
fastq
439
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
436
Homo sapiens
Biosample type
303
cell line
113
tissue
14
in vitro differentiated cells
6
primary cell
Organ
436
liver
214
pancreas
203
brain
191
heart
183
kidney
150
epithelium
132
vasculature
128
blood vessel
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
13
adipose tissue
12
vein
11
spleen
8
bone element
8
skeleton
1
pituitary gland
Project
436
AMP
Genome assembly (visualization)
432
hg19
365
GRCh38
Lab
402
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tar
organ_slims!
limb
target.investigated_as!
other context
BIOSAMPLE
ASSAY
436 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
302
1
tissue
liver
82
20
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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