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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
13
ATAC-seq
8
DNase-seq
1
FAIRE-seq
Assay category
183
DNA binding
22
DNA accessibility
Target of assay
116
histone
116
histone modification
67
transcription factor
64
broad histone mark
52
narrow histone mark
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
313
November, 2017
195
June, 2019
189
October, 2019
133
May, 2021
104
August, 2021
97
May, 2019
96
August, 2017
72
December, 2017
72
November, 2018
65
April, 2019
64
February, 2023
46
September, 2018
40
May, 2024
40
October, 2018
38
May, 2022
36
November, 2019
30
December, 2018
27
May, 2020
22
February, 2021
21
January, 2019
16
February, 2018
11
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
Available data
381
bigWig
362
bam
205
bed narrowPeak
tsv
90
tagAlign
87
fastq
72
bigBed narrowPeak
10
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
205
Homo sapiens
Biosample type
127
primary cell
57
cell line
16
tissue
5
in vitro differentiated cells
Organ
51
liver
12
blood
12
bodily fluid
6
pancreas
4
spleen
3
epithelium
2
brain
1
adipose tissue
connective tissue
Project
120
AMP
85
T1D
Genome assembly (visualization)
203
hg19
174
GRCh38
Lab
114
Kyle Gaulton, UCSD
91
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
cell line
HepG2
44
GM12878
12
EndoC_BH1
1
tissue
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
pancreas
1
+ See 1 more…
in vitro differentiated cells
cardiomyocytes
3
pancreatic PP cell
2
See all biosamples
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