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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
7
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
pCHi-C
Assay category
400
Transcription
7
DNA binding
6
DNA accessibility
Target of assay
5
RNA binding protein
5
transcription factor
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
12
July, 2019
5
October, 2018
3
August, 2017
2
February, 2020
1
February, 2023
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
0
bedpe
Organism
414
Homo sapiens
Biosample type
412
tissue
2
primary cell
Organ
632
pancreas
615
liver
553
connective tissue
414
adipose tissue
359
heart
307
epithelium
229
brain
207
kidney
201
vasculature
197
blood vessel
132
artery
99
limb
69
musculature of body
66
bone element
54
blood
bodily fluid
38
eye
32
nerve
28
embryo
18
ureter
15
spleen
13
vein
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
414
AMP
Genome assembly (visualization)
411
hg19
409
GRCh38
Lab
414
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
414 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
381
1
1
1
omental fat pad
5
3
1
1
2
subcutaneous adipose tissue
7
2
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
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primary cell
mesenchymal stem cell of adipose
1
1
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