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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
30
ChIP-seq
2
Hi-C
Assay category
76
DNA accessibility
30
DNA binding
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
transcription factor
10
narrow histone mark
9
broad histone mark
1
RNA binding protein
Date released
258
November, 2017
210
June, 2019
152
October, 2019
105
August, 2017
97
May, 2019
92
August, 2021
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
44
May, 2021
40
May, 2024
39
November, 2019
38
May, 2022
30
December, 2018
21
January, 2019
18
February, 2021
16
February, 2018
15
March, 2020
7
July, 2019
6
October, 2017
5
September, 2017
3
October, 2022
2
November, 2020
1
August, 2018
Available data
138
tsv
122
bed narrowPeak
88
bam
78
bigWig
64
xls
57
txt
39
fastq
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
108
Homo sapiens
Biosample type
65
tissue
28
in vitro differentiated cells
15
cell line
Organ
64
kidney
15
liver
6
embryo
2
connective tissue
1
pancreas
Project
108
AMP
Genome assembly (visualization)
90
GRCh38
43
hg19
Lab
64
Katalin Susztak, Upenn
26
AMP-T2D consortium
16
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent control read length
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
108 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
tissue
kidney
64
islet of Langerhans
1
in vitro differentiated cells
neural progenitor cell
10
pancreatic endoderm
6
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
+ See 4 more…
cell line
HepG2
14
1
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