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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
47
ATAC-seq
30
DNase-seq
6
WGBS
2
RRBS
Assay category
114
DNA binding
77
DNA accessibility
8
DNA methylation
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
17
transcription factor
11
RNA binding protein
Date released
47
April, 2019
40
May, 2024
35
February, 2023
33
June, 2019
15
May, 2019
12
February, 2021
12
July, 2019
5
October, 2019
Available data
224
bigWig
211
bam
191
bed narrowPeak
168
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
199
Homo sapiens
Biosample type
180
tissue
12
cell line
7
primary cell
Organ
444
liver
pancreas
204
brain
199
heart
187
kidney
157
epithelium
135
vasculature
130
blood vessel
93
limb
78
connective tissue
74
artery
64
musculature of body
54
blood
54
bodily fluid
34
eye
27
nerve
18
ureter
16
spleen
15
adipose tissue
14
embryo
13
vein
8
bone element
8
skeleton
1
pericardium
1
pituitary gland
Project
199
AMP
Genome assembly (visualization)
196
GRCh38
115
hg19
Lab
159
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
files.file_type!
tagAlign bed3+
organ_slims!
pancreas
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
RRBS
tissue
coronary artery
3
36
2
left cardiac atrium
40
1
heart left ventricle
29
2
3
2
1
heart
12
18
1
heart right ventricle
11
1
2
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
1
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