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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
8
DNase-seq
7
ATAC-seq
1
RRBS
Assay category
15
DNA accessibility
14
DNA binding
1
DNA methylation
Target of assay
8
histone
8
histone modification
6
RNA binding protein
6
transcription factor
4
broad histone mark
4
narrow histone mark
Date released
August, 2017
15
June, 2019
5
October, 2018
2
August, 2021
2
November, 2020
1
February, 2021
1
February, 2023
1
July, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
522
bam
505
bigWig
478
tsv
29
bed narrowPeak
29
fastq
25
bigBed narrowPeak
16
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
30
Homo sapiens
Biosample type
18
primary cell
10
tissue
2
in vitro differentiated cells
Organ
425
liver
205
brain
199
heart
187
kidney
171
pancreas
140
epithelium
135
vasculature
130
blood vessel
93
limb
74
artery
54
blood
54
bodily fluid
49
musculature of body
34
eye
30
connective tissue
27
nerve
18
ureter
16
spleen
13
vein
10
adipose tissue
8
bone element
8
embryo
8
skeleton
1
pericardium
1
pituitary gland
Project
30
AMP
Genome assembly (visualization)
29
hg19
26
GRCh38
Lab
28
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
month_released!
August, 2017
February, 2018
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
DNase-seq
ATAC-seq
RRBS
primary cell
cardiac fibroblast
3
3
1
mesenchymal stem cell
6
osteoblast
1
2
brain pericyte
1
hepatic stellate cell
1
tissue
omental fat pad
3
2
1
subcutaneous adipose tissue
2
adipose tissue
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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