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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
331
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
299
transcription factor
81
recombinant protein
74
histone
74
histone modification
56
RNA binding protein
broad histone mark
29
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
268
November, 2017
202
June, 2019
139
October, 2019
98
August, 2021
92
August, 2017
80
November, 2018
69
May, 2021
65
February, 2023
57
December, 2017
39
May, 2019
38
May, 2022
31
November, 2019
30
December, 2018
30
July, 2019
29
September, 2018
28
April, 2019
27
May, 2020
26
October, 2018
23
February, 2021
20
May, 2024
17
January, 2019
8
February, 2018
7
October, 2017
5
September, 2017
3
March, 2020
2
November, 2020
Available data
433
bam
404
fastq
369
bigWig
341
bed narrowPeak
340
bigBed narrowPeak
69
bed broadPeak
65
bigBed broadPeak
37
tagAlign
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
348
Homo sapiens
Biosample type
299
cell line
43
tissue
6
primary cell
Organ
294
liver
28
brain
12
blood
12
bodily fluid
7
pancreas
6
spleen
4
epithelium
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
348
AMP
Genome assembly (visualization)
321
hg19
314
GRCh38
Lab
348
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
348 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
286
1
GM12878
12
tissue
layer of hippocampus
6
liver
4
2
spleen
3
1
2
body of pancreas
2
2
caudate nucleus
4
+ See 8 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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