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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
159
total RNA-seq
23
ATAC-seq
3
small RNA-seq
1
WGBS
Assay category
427
DNA binding
162
Transcription
23
DNA accessibility
1
DNA methylation
Target of assay
331
transcription factor
81
recombinant protein
80
histone modification
79
histone
56
RNA binding protein
50
narrow histone mark
29
broad histone mark
23
chromatin remodeller
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
May, 2022
16
August, 2017
14
August, 2021
7
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
1
February, 2021
1
March, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
613
Homo sapiens
Biosample type
333
cell line
260
tissue
14
in vitro differentiated cells
6
primary cell
Organ
634
pancreas
613
liver
554
connective tissue
421
adipose tissue
294
epithelium
237
heart
188
brain
185
vasculature
182
blood vessel
124
artery
117
kidney
66
bone element
61
limb
55
blood
55
bodily fluid
35
musculature of body
29
eye
29
nerve
27
embryo
15
spleen
13
vein
8
skeleton
1
pericardium
1
pituitary gland
Project
613
AMP
Genome assembly (visualization)
608
hg19
520
GRCh38
Lab
579
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
613 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
cell line
HepG2
326
5
1
1
tissue
liver
80
147
20
1
right lobe of liver
7
2
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
5
Liver fetal (hepatocyte)
1
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