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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
177
DNA binding
10
DNA accessibility
Target of assay
145
histone modification
144
histone
79
broad histone mark
64
narrow histone mark
24
transcription factor
11
control
7
RNA binding protein
chromatin remodeller
Date released
255
November, 2017
210
June, 2019
191
October, 2019
187
August, 2017
134
May, 2021
114
August, 2021
97
May, 2019
69
December, 2017
65
April, 2019
65
February, 2023
51
November, 2018
50
May, 2020
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
28
December, 2018
26
February, 2021
20
October, 2017
16
February, 2018
15
January, 2019
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
284
fastq
279
bam
269
bigWig
139
bed narrowPeak
89
tsv
85
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
33
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
180
Homo sapiens
Biosample type
99
tissue
55
in vitro differentiated cells
33
primary cell
Organ
65
connective tissue
53
pancreas
38
liver
17
epithelium
15
musculature of body
10
adipose tissue
Project
187
AMP
Genome assembly (visualization)
140
hg19
115
GRCh38
Lab
187
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
14
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
chromatin remodeller
recombinant protein
BIOSAMPLE
ASSAY
187 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
37
islet of Langerhans
21
1
1
skeletal muscle tissue
15
pancreas
13
subcutaneous abdominal adipose tissue
8
+ See 3 more…
in vitro differentiated cells
adipocyte
54
1
primary cell
skeletal muscle myoblast
14
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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