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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
14
ChIP-seq
6
total RNA-seq
2
small RNA-seq
1
pCHi-C
Assay category
33
DNA accessibility
14
DNA binding
8
Transcription
Target of assay
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
Date released
41
June, 2019
6
May, 2019
4
July, 2019
3
March, 2020
2
February, 2020
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
56
Homo sapiens
Biosample type
45
tissue
11
primary cell
Organ
617
pancreas
552
connective tissue
526
liver
413
adipose tissue
355
heart
286
epithelium
207
kidney
197
vasculature
193
blood vessel
146
brain
128
artery
99
limb
66
bone element
56
musculature of body
54
blood
54
bodily fluid
38
eye
32
nerve
20
embryo
18
ureter
15
spleen
13
vein
8
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
53
hg19
52
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
files.file_type!
tagAlign
month_released!
December, 2017
BIOSAMPLE
ASSAY
56 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
pCHi-C
tissue
muscle of leg
13
6
muscle of arm
17
psoas muscle
2
1
skeletal muscle tissue
1
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
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